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The Genome Got 180,000 Times Cheaper. The Bottleneck Moved.

Sequencing a human genome fell from $95 million in 2001 to about $525 in 2022. GenBank now holds 8.2 trillion bases. We follow the cost curve and the archive to find where the bottleneck went.

Line chart of the cost of sequencing a human genome falling from $95 million in 2001 to about $500 in 2022
Martin DAVILABy Martin DAVILA6/14/20266

In 2001 it cost about $95 million to sequence one human genome. In 2022 it cost about $525. That is a 180,000-fold drop in 21 years, and most of it happened in a single year.

Cost curves that steep usually reorganize an industry. This one did, but not where most people expected. Sequencers got cheap. Everything that happens after the sequencer did not follow. This post looks at one curve and one archive to show where the bottleneck went.

How cheap did sequencing get?

The National Human Genome Research Institute has tracked the cost of sequencing a human-sized genome since 2001. For the first six years the price fell roughly in line with Moore's law, the benchmark NHGRI plots beside it. Then it broke away.

Sequencing a genome fell 95% in one year, 2007 to 2008, when labs switched technologies.

Cost to sequence a human-sized genome, US dollars, log scale.

  1. 12003: Human Genome Project ends
  2. 22008: Next-generation sequencing takes over

Source: NHGRI Genome Sequencing Program, via Our World in Data. The y-axis is logarithmic, so each gridline is ten times the one below it.

View data
yearcost
200195263070
200261448420
200340157556
200418519312
200513801124
200610474556
20077147571
2008342502
200970333
201029092
20117743
20125901
20135096
20144008
20151245
20161176
20171015
20181232
2019606
2020512
2021454
2022525

The curve has two regimes. From 2001 to 2007 the cost fell by roughly 92%, from $95.3 million to $7.1 million. In 2008 it fell another 95% in twelve months, to $342,502. NHGRI attributes that break to sequencing centers moving from Sanger sequencing to second-generation technologies. After that the decline slowed, and the last three data points sit between $450 and $525.

Two cautions. These numbers cover the cost of generating sequence at large sequencing centers, not the full cost of a clinical genome with analysis and interpretation. And the 2022 figure ($525) is higher than 2021 ($454), so the curve is flattening, not still falling off a cliff.

Where did all that cheap DNA go?

Into public archives, mostly. GenBank, the US archive of nucleotide sequences, publishes a release statistic every two months. We took one release per year since 2018.

GenBank grew 29-fold in eight years, from 0.28 to 8.24 trillion bases.

Total bases in GenBank at selected releases, trillions. Release 228 (Oct 2018) to release 273 (Aug 2026).

Source: NCBI GenBank release statistics. Selected releases only. Values are bases in trillions.

View data
releasebases
Oct 20180.28
Aug 20190.37
Jun 20200.43
Apr 20210.83
Dec 20221.64
Oct 20232.43
Oct 20244.25
Aug 20255.68
Aug 20268.24

Look at the record count, not just the bases. GenBank held 209.7 million sequences in October 2018 and 267.4 million in August 2026, an increase of 28%. Bases grew 29-fold. The average record went from about 1,300 bases to about 30,800. The archive is not filling up with more entries. It is filling up with much larger ones.

What changed for the people who use this data?

When a genome cost $95 million, the sequencer was the scarce resource. Teams planned around it. At about $500, a genome is no longer scarce. What is scarce is everything attached to it:

  • Storage and transfer for files that now arrive by the terabyte.
  • Compute and pipelines that give the same answer twice.
  • Phenotype, consent, and clinical context, without which a genome is a string of letters.
  • People who can tell whether a result is real.

None of these has an equivalent public cost curve in the sources behind this post. That is the point.

Limits

The cost series we used ends in 2022. We did not add vendor price lists, because a list price is not a measured cost across sequencing centers. GenBank is also one archive among several, and the statistic counts bases, not information.

Sources

  1. NHGRI, The Cost of Sequencing a Human Genome. Annual series via Our World in Data.
  2. NCBI, GenBank and WGS Statistics, releases 228 to 273.

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